2 Ghz/2 MB L2 cache CPUs with 16 GB of RAM running on Debian 4.0 (kernel 2.6.16.21), a MacBook Pro laptop with a Core 2 Duo 2.4 Ghz/4 MB L2 cache CPU and 2 GB of RAM running on MacOS X 10.5.4, or on an ASUS M6NBe laptop with a 1.6 G Hz/2 ICG-001 MB L2 cache Tipifarnib price Dothan CPU and 1 GB of RAM running on MS Windows XP SP3. Maximum likelihood (ML) analyses were computed using PHYML 3.0 [30] under the GTR + Γ4 +I nucleotide substitution model. This model was selected using the Akaike Information Criterion (Akaike 1973), as implemented using jModelTest 3.7 [31]. One hundred bootstrap replicates were performed for each ML analysis. Maximum parsimony (MP) analyses were performed with PAUP* 4.0b10 [32], each using a thousand
bootstrap replicates. Selleckchem Fer-1 Accession numbers Nucleotide sequence data
reported are available in the GenBank database under accession numbers [GenBank: FJ154797] to [GenBank: FJ154838] (Table 2). Table 2 Accession numbers Accession Numbers Streptococci recA secA secY 16S rDNA S. agalactiae 2603V/R [GenBank: NC_004116] [GenBank: NC_004116] [GenBank: NC_004116] [GenBank: NC_004116] S. agalactiae A909 [GenBank: NC_007432] [GenBank: NC_007432] [GenBank: NC_007432] [GenBank: NC_007432] S. agalactiae NEM316 [GenBank: NC_004368] [GenBank: NC_004368] [GenBank: NC_004368] [GenBank: NC_004368] S. gordonii str. Challis substr. CH1 [GenBank: NC_009785] [GenBank: NC_009785] [GenBank: NC_009785] [GenBank: NC_009785] S. infantarius ATCC BAA-102 [GenBank: NZ_ABJK02000015] [GenBank: NZ_ABJK02000019] [GenBank: NZ_ABJK02000013] [GenBank: AF429762] S. mutans UA159 [GenBank: NC_004350] [GenBank: NC_004350] [GenBank: NC_004350] [GenBank: NC_004350] S. pneumoniae CGSP14 [GenBank: NC_010582] [GenBank: NC_010582] [GenBank: NC_010582] [GenBank: NC_010582] S. pneumoniae G54 [GenBank: NC_011072] [GenBank: NC_011072] [GenBank: NC_011072] [GenBank: NC_011072] S. pneumoniae Hungary19A-6 [GenBank: NC_010380]
[GenBank: NC_010380] [GenBank: NC_010380] [GenBank: NC_010380] S. pneumoniae R6 [GenBank: NC_003098] [GenBank: NC_003098] [GenBank: Interleukin-3 receptor NC_003098] [GenBank: NC_003098] S. pneumoniae TIGR4 [GenBank: NC_003028] [GenBank: NC_003028] [GenBank: NC_003028] [GenBank: NC_003028] S. pyogenes M1 GAS [GenBank: NC_002737] [GenBank: NC_002737] [GenBank: NC_002737] [GenBank: NC_002737] S. pyogenes MGAS10394 [GenBank: NC_006086] [GenBank: NC_006086] [GenBank: NC_006086] [GenBank: NC_006086] S. pyogenes MGAS315 [GenBank: NC_004070] [GenBank: NC_004070] [GenBank: NC_004070] [GenBank: NC_004070] S. pyogenes SSI-1 [GenBank: NC_004606] [GenBank: NC_004606] [GenBank: NC_004606] [GenBank: NC_004606] S. pyogenes str. Manfredo [GenBank: NC_009332] [GenBank: NC_009332] [GenBank: NC_009332] [GenBank: NC_009332] S. salivarius ATCC 25975 [GenBank: FJ154806b] [GenBank: FJ154817b] [GenBank: FJ154828b] [GenBank: FJ154797b] S. salivarius ATCC 7073 [GenBank: FJ154807b] [GenBank: FJ154818b] [GenBank: FJ154829b] [GenBank: AY188352] S.